NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065715_10253473

Scaffold Ga0065715_10253473


Overview

Basic Information
Taxon OID3300005293 Open in IMG/M
Scaffold IDGa0065715_10253473 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1160
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan State University
CoordinatesLat. (o)42.406189Long. (o)-85.40016Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005764Metagenome / Metatranscriptome391Y
F023459Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0065715_102534731F005764N/ASVFAQIPAAPDASGLPSGRKAPDFPLLAMLPALISHPAFEFRGIRIGDGMKEAEREFLALKAPSRFSKPGLCGSDGISRMETCTDVLDTGEYVNMTMLDQRVAQIYVSTDGRTQGNTYGSYVLALTTKYGSPDKRETKYYHNGVETGSSGEHLRWLNGDQYMEGSESERAIIIGSRALDEDIAEQKEIYESN*
Ga0065715_102534732F023459GGAGMLVAEKAVGLSWVSVRDRLPFDGHECALICRNLNSSDLRRAIGCRLHGDWKIEDCALVNWDVRAWLKLPSTPSHL*
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