NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065705_10151038

Scaffold Ga0065705_10151038


Overview

Basic Information
Taxon OID3300005294 Open in IMG/M
Scaffold IDGa0065705_10151038 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1939
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location NameEast Lansing, MI
CoordinatesLat. (o)42.794771Long. (o)-84.393804Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042514Metagenome / Metatranscriptome158Y
F071384Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0065705_101510383F071384GGAMTQNDRTEQLLTEILQVQRSQLDEYKRVTSESLQLQRRAVDAQIRYLRLLRPMLIVGAAVVAGLVVYVLWLSRFIR*
Ga0065705_101510385F042514N/AVSVDRDIATARALFEKAEREANPELKARALEDAIALLASCDPDEITDADARRIANLRMAHTRRLLTQLVGLASVSMDAWFDYIGLLFGELRSEVRSLTEADAGLNDNYRRLVKLWGSALAEILERQPPHAP*
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