Scaffold Ga0065705_10428911

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065705_10428911

Scaffold Ga0065705_10428911

Overview

Basic Information
Taxon OID	3300005294 Open in IMG/M
Scaffold ID	Ga0065705_10428911 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	817
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046295	Metagenome / Metatranscriptome	151	Y
F068656	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_104289111	F068656	GGA	MRRTLILLVTLAVGAAALVALWIFTGREISSFIDRFWTVETRSGSIQSIAYEG
Ga0065705_104289112	F046295	N/A	RWIKLAETQGAELIARPFSKETLRRGVIPEFLQSIGISSSQFRDRAVRRNEAVGPFTVSVAREVLRAIGKEMTWLQAKKCKVELAKYLRQNKCTDGGYCGLSSALARRVEKELRSDNDVFAQRVWGKSWADVFAADVTEEFTPNDFEMRRPDWLVARRLRRAISKLKDFAHQMLLDPALAVEAPWNDVAHRGGLVSKE*

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