Basic Information | |
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Taxon OID | 3300005326 Open in IMG/M |
Scaffold ID | Ga0074195_1082862 Open in IMG/M |
Source Dataset Name | Bioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample HSE6-23 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 926 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Espanola, New Mexico, United States | |||||||
Coordinates | Lat. (o) | 35.9918 | Long. (o) | -106.0796 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010068 | Metagenome / Metatranscriptome | 309 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074195_10828621 | F010068 | AGGAGG | MNVKGTFYVLTKTAMTTAFGEERWKSFMTKLAEKDKYFKNMIMSITLSPVEKLIIFFDEMCAEFFNNDKMSYLMFGKIGAKYALSPEGPYKSFMLTKDIKQFVEIYMPKLWTAFFDGGTVITKLENNIVHIKVTGINIKNMYFEQLVMGYNQQALKVFGKKSVVKKVRSIASGDNDIYYQFQLLES* |
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