NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070683_100437744

Scaffold Ga0070683_100437744


Overview

Basic Information
Taxon OID3300005329 Open in IMG/M
Scaffold IDGa0070683_100437744 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1247
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012802Metagenome / Metatranscriptome277Y
F022478Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0070683_1004377441F012802N/AMPEVVVRGWARVLHNQRALYIKRLLLFERHVILSSVPYQLFR*
Ga0070683_1004377442F022478GAGVQHRVLVYADALDVAAEGAVWYARKVGGGRFDALHVAGKNTDSGIHARWFEFTGGEPRLDVRPAGTDAQQAVLSEIARLHGTGDDVVVTVVLPEQFSKRSLFAAAQRAQFRLKLRLLTEPRVVVADVPAVTSERRPEGRVPERLVVRVIAGEVDDATLRAIDYARGIGADDLRAVHFGERSWTDDDLGLPADDAPLDGRLGDSILAYVRRLTADETAAVNVVLPERLQANLPRLRSRRAINVKRCLLFEPHVILSSVPTQEG*
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