NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070670_100000164

Scaffold Ga0070670_100000164


Overview

Basic Information
Taxon OID3300005331 Open in IMG/M
Scaffold IDGa0070670_100000164 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60394
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F095945Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0070670_10000016429F095945GGAMIAVLALFFATAFPSNSKTSWMRPESFHLTIGMNRAAAVKALESNGWKTKKGDSAGQILVDYADDKSLTLQFAGERLTSIRFELFTILQDAPKAFEEERLFLRESLGKPRTATKKVVIYDHKLPNVMAVLSADPKSEQAQKGVGMLVVRYYDPAVK*
Ga0070670_10000016462F002324GGAGGMGEIKLFQVCYEGELTLAVSEAMRRLGAEPNFDQSWNVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTSTRDFLLIRHSLTPGADYSELHDAIARLGVVVDLPFESTFVVQSDDRTDVNTLGMALGELCPDDALFVTGISHDWAYCDGTTSRMYVAEQEPKSIQFRTF*
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