NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0068869_100080672

Scaffold Ga0068869_100080672


Overview

Basic Information
Taxon OID3300005334 Open in IMG/M
Scaffold IDGa0068869_100080672 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2427
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000621Metagenome981Y
F098825Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0068869_1000806721F000621N/AMPTTKHELLDWLMDVPEDAEIGTDGDGLALLAILGTNVHLLEVGHIPNADELYAEAINQAMLERLRRIDAAGGETETAIIIVTFQGYISGIPRLFSTDFNTAFIFKNREQAEAFITEFAEELYNPQILDYR*
Ga0068869_1000806725F098825AGGAMTEVKRIKFITFRVTPDEYSQIERAASESDLEPNNWCRDLALSVANGGQRFTINERILHTEISQLRFLVVHGFSGIFGRNTAKASTWDKLVKQAVQSTKEIVIELQSGSKRG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.