NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070666_10152278

Scaffold Ga0070666_10152278


Overview

Basic Information
Taxon OID3300005335 Open in IMG/M
Scaffold IDGa0070666_10152278 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1614
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055978Metagenome / Metatranscriptome138Y
F099664Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0070666_101522782F099664GGAGGMSDRMDLLNQLWPRGPRRKRRPWRPPWDEQPDDPRGTWDEQPDDPNEAWDEQPPPRRYPRG*
Ga0070666_101522783F055978GGCGGMSQEPDLVRLLYRADWTRLSLAAEVSVRRDLDLDRAYTEAAVAPPGHEWEMATDQLGAETRRSTLLIQPGRRYREQGEDRAGGCDGDRSWLAIREGDGWNVEADDGPEPPLPPMLRPSWLLTGYTLEGGEPVTVGEREALRLVATPRPVIRSRASAGTRPLDRVEMLVDAGLGILLRHEEILDGRTLSVTELTEVRLDPAPVDDDQFAPPGGWDSVPGSVPPAAPWGPGREA
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