NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070692_10160134

Scaffold Ga0070692_10160134


Overview

Basic Information
Taxon OID3300005345 Open in IMG/M
Scaffold IDGa0070692_10160134 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1289
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013837Metagenome / Metatranscriptome268Y
F043689Metagenome / Metatranscriptome156Y
F050357Metagenome / Metatranscriptome145N
F051250Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0070692_101601341F051250N/AVVAGRGHSSEQRGFTEALYDAKAKVNEHAERLGRKGRTDWFGFVLDLDRPTVIAPPGSTQPILGWERVYFVDGRG*
Ga0070692_101601342F013837AGGAMTTHMDLIRKAPLPPVKQAVSLDTPRDAATDPRRSLERSFEVESPGGHARTVVGRLAYFDEEAQTYMVLTGSGVLVRVPLRDITSSSGDPRSGSIVADALSKMSRLRNATTVSRP*
Ga0070692_101601343F043689AGGAGGMTTLMDTVRIEAPKRSPVRPASPLDPSWDDGSQIPSSERSVRDRSRSTQWDLLAMGLGRSLWKEAA*
Ga0070692_101601344F050357N/AEPVEGIRLWRANRQKLVGMVYLDKGVLDLDIPDDHERALVEDVLDQTGQVTWSFSRFDEGEWQENIAEPRTDRWLWFVVANILYPMGYQADLGISEDGEPTTG*
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