Scaffold Ga0074242_10457897

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074242_10457897

Scaffold Ga0074242_10457897

Overview

Basic Information
Taxon OID	3300005346 Open in IMG/M
Scaffold ID	Ga0074242_10457897 Open in IMG/M
Source Dataset Name	Saline sediment microbial community from Etoliko Lagoon, Greece
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1987
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Etoliko Lagoon, Greece
Coordinates	Lat. (^o)	38.482158	Long. (^o)	21.313175	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032642	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074242_104578973	F032642	AGGAGG	VKQPRPEVWRKRSMSVFDTAGLVGALEVLEHHARRLCHKHPNDYLLDGLRNILCSIDELEAAGRFGTVVTEKREQAMSKHPSGKNRDLTDLLDSPNTHPTQPATQPSEATERQGADG*

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