NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074242_10699023

Scaffold Ga0074242_10699023


Overview

Basic Information
Taxon OID3300005346 Open in IMG/M
Scaffold IDGa0074242_10699023 Open in IMG/M
Source Dataset NameSaline sediment microbial community from Etoliko Lagoon, Greece
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1208
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.482158Long. (o)21.313175Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040933Metagenome161N
F059470Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0074242_106990231F059470N/AHLWANSPVDGQDMIKLEAYGGNDNVDRGDAYKGAMTDALTKIGSFLGIGADVWKDRSRKASQNRPQRAQASRPTSSQGQTPSRDSEPTSWLNLSDKDGFVNERGQQILEGVRLGEYTIDMIKSKYKINKRDFELLQEAAKQ*
Ga0074242_106990232F040933AGGAGGMKEILNAHLTELVNNVENGDTSPLEAWFEMKQIMDKAKWAMGLVEDAAINERESIGADEYKVEGFRIEVVQGRKIYSYKHIGRWKELQVQMKQVEQAAKTAADTGHLVVDHYGQEIEPAEMSFGKSYLKASVIR*
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