NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070675_100053157

Scaffold Ga0070675_100053157


Overview

Basic Information
Taxon OID3300005354 Open in IMG/M
Scaffold IDGa0070675_100053157 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3331
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032845Metagenome179Y
F060291Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0070675_1000531573F032845N/AVRRTITNATWAEIRTAYASGIGLREIARNMGIPEGTVLARAKRESWTREIQNARTLVKREDSALAVTPVEAVAATLAERGQRHLKRMAGVSERCVDHIDTMDGPEILNSVDQIEKLDKVARARKITRKDSSRTVRRGLIN*
Ga0070675_1000531576F060291N/AVFYLGDTFRQHQEFTITAVTVVEEQSDCSTRATWILEGGQEGGQRLRYVTYGAKYPDLKEGQRPLRLKRGKRYEVFVYTSTGAKRVDTFAFRVDENGNVRQVPWLVF*
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