NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0070674_100573843

Scaffold Ga0070674_100573843


Overview

Basic Information
Taxon OID3300005356 Open in IMG/M
Scaffold IDGa0070674_100573843 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001755Metagenome / Metatranscriptome641Y
F011951Metagenome / Metatranscriptome285Y
F095079Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0070674_1005738431F011951N/AVAAPGAGSTAMTGAQFEIRIDGTPRSYRDRKDYAMEAARFLKSKNPHSMVEVKDLQSGDVTAVAHRPE*
Ga0070674_1005738432F001755GGAGMALKLRPSGIGSGIDKDRPDYTVVTGEWEVGRIYETRGGPDNLRWFWSMTVNGPMTRSDRVATLEEAKAQFQKSWDAWKKGAKLEEID*
Ga0070674_1005738433F095079GAGMTPEYLAKPLTPFPLPTTDGWMLRTIGDTGAYILALPKRRKRLAHWEQVRRLIMKEAGVATVTLQVHRALSKDDKLDVFAFESITSARRWWSAQKLEEE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.