Scaffold Ga0070674_100653118

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0070674_100653118

Scaffold Ga0070674_100653118

Overview

Basic Information
Taxon OID	3300005356 Open in IMG/M
Scaffold ID	Ga0070674_100653118 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	894
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008102	Metagenome	339	Y
F035984	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070674_1006531181	F035984	GAG	MKLRRTISLAILIGVFLLPVVVQAQAPSPTPAPSPVRSLSDNIAALSQRAGSLLPYINDEIVSKLIGWFELLAWVFGNCLAGF
Ga0070674_1006531182	F008102	N/A	TVRDVFALKRAIETMVISRLNMIKSIKTRLMNGIFDPDADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTAQARQAGAAQQMKQAKDKLDAELAKPQAEQCAHCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKRYNLAMEERVRIANRVKATDEAWDRLNIVKDGIFDAIQRGGVPSPSPGQP*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.