NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070673_100230523

Scaffold Ga0070673_100230523


Overview

Basic Information
Taxon OID3300005364 Open in IMG/M
Scaffold IDGa0070673_100230523 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1606
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011424Metagenome291Y
F040730Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0070673_1002305232F011424GGAMVLSVILLVTGVAAYSKMHRLAVSNEYRASMESRRSLMNVIELKEWSYFPDENQPTQIRVGVVVHQSGRFAGNVTGEQTDSSGSSTTIFESTNGPESQRQVRNGDAFTYAFPLKFLIAGRADDVRITLYLFKAASGPATGDIAKVFMKSPQHEDDGEYFYGVLPPFSSRR*
Ga0070673_1002305233F040730GAGMKSVWRKHLLICLVLGLLAIPIYFLDWALLGGSGGGNWIKLDFRGLIFWSYITLLAVQVTLSSIALLLFPKAGARCGFTWARWFFP*
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