NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074223_1087

Scaffold Ga0074223_1087


Overview

Basic Information
Taxon OID3300005383 Open in IMG/M
Scaffold IDGa0074223_1087 Open in IMG/M
Source Dataset NameMarine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Summer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14158
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica

Source Dataset Sampling Location
Location NamePalmer Station B, Arthur Harbor, Antarctic Peninsula
CoordinatesLat. (o)-64.766667Long. (o)-64.05Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035964Metagenome / Metatranscriptome171N

Sequences

Protein IDFamilyRBSSequence
Ga0074223_108721F035964N/AMKNQLVVNNGKLVVATANVEKVAKKVVKFREIFGIRLGAKPSIELRTAVKVLEKNKERSNMTFNYILSEYKKEMIRNDKKTDGKNFEGRLRRILYRSIESGITRESIQGIKFNLNANYKGIKVITSQPFVFNNSANVARKDVEENLYTFKFNKVVTLINKAELKTVADKVKAFKTLIR*
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