Scaffold Ga0066858

Basic Information
Taxon OID	3300005398 Open in IMG/M
Scaffold ID	Ga0066858_10003257 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005398 Open in IMG/M

Scaffold ID

Ga0066858_10003257 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5224
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5224

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F032241	Metagenome	180	N
F038425	Metagenome	166	Y
F056907	Metagenome	137	N
F061287	Metagenome	132	Y
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066858_1000325711	F061287	GGAG	MDKHDRETMIKVLMKLKLQRKILDRMRDNEISSLFSLLKKYVT*
Ga0066858_1000325713	F038425	GGA	MDGEKSRVHCPKCDKLMWWWGYASSYTGDGSSELGLGCENPECDGYEILPEDVYDAIVTEEERIDA*
Ga0066858_1000325714	F032241	N/A	TEDIRDKGMYYPIIVSPFVKTDNNELILGDMASKRDDRKWWILDGERRWLSAVSLGHKTIDAMVRTDLTMLEMLEIQFASNTKRLQVTITEMSKAVLRFRDEYKKENGEYDEADFIKSLCSLTGFSSAYFTMVEAINRADDDMKDSVLADEVGGYAPYEIEKATKDEHFRRGITDAYLESEKQIGALVPRALKYDLKVIEAEGNLNPSEKRLLAKQMVNDFTHKGGRTRDSEPHFLLYKQKAMKFLREVQHWNLNGLKNKEVLTLVGLIEGVYNHFKEDRRLNGQMFSRKTGENIFGTKETGGDSD*
Ga0066858_100032573	F074138	GGAGG	MDWSQLYIHPSDDTTDDDIRDFVEWVSRKAERLGFRVELKRHRKVASGSSDTMSTNPLEQSNEKH*
Ga0066858_100032574	F056907	N/A	MSGNAYYIPGDTGVGTKLPIGEYEATITALDVVDNVICGKFIADVFKPVYTVQHRDYPKADIKDNGIFRYKEKPGYNYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDMIDGFSVIIEVSYKNFVNESGNPVRYPVGTLRKKVGEVPF*
Ga0066858_100032575	F021867	GAGG	VELKGCINKEDNIMDNNVEQVDWGKVNRGKVRYGFALELYKRGGDLKPSEIGKIEAFVEYVMEGPDYYPTDEGKPDKSRPKLMPVEECKKVITTESEGSKAFVKAMVHIDAEGLNDNDLEKVLQALKAGKITMDNLQASLDKIQIIKSSYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066858_10003257

Overview

Ecosystem & Geography

Associated Families

Sequences