NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066858_10013054

Scaffold Ga0066858_10013054


Overview

Basic Information
Taxon OID3300005398 Open in IMG/M
Scaffold IDGa0066858_10013054 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2508
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007052Metagenome / Metatranscriptome359Y
F012279Metagenome / Metatranscriptome282Y
F016675Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0066858_100130542F016675N/AMKQFEVDFETTVPPWHTGHEKYEAEDLATAKMMFRSKHEAARIYKVAEVLYDELTHRLKVI*
Ga0066858_100130546F000615AGGMCRIRCFYECSDGKLSCAEMIMSYEEDIAGFVKHWKTGGRMVITEHYEIG*
Ga0066858_100130547F007052AGGMENKNETYFVARLFKKGKFLSSEIFESLEESRVWGMKESKRLISHLEMLRLGVDDICVKIDKHFFVYESSLEELMKNSKKVI*
Ga0066858_100130548F012279AGGMTERERVEGMLIENRLSDLKSLMSTLTAAEETVDTLRDRKWILVEELKELGHNFKTTCEGMDIVLSAPPSMRF*
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