NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066867_10024673

Scaffold Ga0066867_10024673


Overview

Basic Information
Taxon OID3300005400 Open in IMG/M
Scaffold IDGa0066867_10024673 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2458
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002566Metagenome / Metatranscriptome547Y
F091872Metagenome107N
F093713Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0066867_100246732F002566AGGAGVIYLKWKLSTDGVSGTGPEGPIAEAGGNAAASWAVDADGYRIGYASDNADLRGGPWQVAEITEAQALTFCQAIYADAEVLPDGTISGPPPDDEPV*
Ga0066867_100246734F093713GGAMEDNVNDILTRAGKTWLQTFVGLLVASWASRTINIETLDPLQELSTIAGLAFASIPAAVSALQNSLKLAKPGA*
Ga0066867_100246735F091872N/AVPELVASVGIIAAATISAISAVLVARLRFDYRSQVGIEVDLLREINKRTTRIEDRVNDHGERIATIEGRHAAQ*
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