NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066867_10046601

Scaffold Ga0066867_10046601


Overview

Basic Information
Taxon OID3300005400 Open in IMG/M
Scaffold IDGa0066867_10046601 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017148Metagenome / Metatranscriptome242Y
F084710Metagenome / Metatranscriptome112N
F089035Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0066867_100466012F017148N/AMRDKMKNQYIDWLNARDARRVVAPVEGHEGYRVVSAMTVRDLQQDDFASPVEEDCGWFGYEGLCED*
Ga0066867_100466013F084710N/AVSERKNNEINKMNKNNEIVNPIDNGQVITSEVLVSCCGCNEELRITREEADEWTDTDWFMCHECE*
Ga0066867_100466014F089035GAGMTAYEMTSKMIRKPKPDALKRLEAAQAQARKQKRMIKEALETIRLNKPYKRSEDAPTLKEWNDSWIG*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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