NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066857_10020528

Scaffold Ga0066857_10020528


Overview

Basic Information
Taxon OID3300005401 Open in IMG/M
Scaffold IDGa0066857_10020528 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV203
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2384
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y
F004439Metagenome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0066857_100205282F004439GAGMKSFIQHLNEVVLRSSLSDMLFQPKITEYNRLMIPISSSMYKRIWPDNIRATVFHTTDVEGVKKIAKLQGKKTQISAFFAMQSRYMEIGVATQGGVHAVLEMDADILLSAKGDIMSYVDKGGRRWTTIADLQETSRYQNFGKVLRDMEKMFAALVPKYLTRGEFQDYSTIFQIWHMAKRKVDSKTMSLIIRDYMDGMEKVIKNNLDTFSGVMRSYVKKRQSDYSWDEQIVNNIKVKKAHLFRLKLDKNGENSLTPEQDELIEYIESKNWPYTRWDAAIELEIYTRDIANKELGK*
Ga0066857_100205283F000245GGAMKTYSRFKEGSLDDKLDKYVSNEIKKRKLARFPVNATDDYKMKTKKNLAFKFPTPSGEMMFHVYLRPMPKPAKSHTKAFNYDIEDK*
Ga0066857_100205285F002715AGGAMAEGKELQDVKLEVGLLKNEVEARGKQTEVLLSKLDLTTDKLQQLTVQIIKLNTRQEDHLKHDTTVRDELKILHTRIGDLHDKQLSAQKEIEHRLDRLDQYKSKLMGMIVVVGGALGVTVTLALHFL*
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