Basic Information | |
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Taxon OID | 3300005404 Open in IMG/M |
Scaffold ID | Ga0066856_10009958 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4015 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013897 | Metagenome / Metatranscriptome | 267 | Y |
F031447 | Metagenome / Metatranscriptome | 182 | Y |
F036278 | Metagenome | 170 | N |
Protein ID | Family | RBS | Sequence |
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Ga0066856_1000995810 | F036278 | GAGG | MTHDYQPEGVKYCYPDDDPYQESNEIYYNMVDFLDDSEVHQIWEIVGKAMDRNNIVTTDNESLSVRVYDEINDED* |
Ga0066856_1000995812 | F031447 | GGA | MSIMTTTKELRQYTITATKTFTYYKTVNATDIVDAHVKAHEPVEDMLDDWTCHWDYDYDEPTKDNGLMIVTHIEDEGVA* |
Ga0066856_100099585 | F013897 | GGA | MLDLSHFTRDQLLALMNTVDFAMDNDASYEEYTIIKSGTTDLQSIRDILYNKIIQQQG* |
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