Scaffold Ga0066856

Basic Information
Taxon OID	3300005404 Open in IMG/M
Scaffold ID	Ga0066856_10013601 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005404 Open in IMG/M

Scaffold ID

Ga0066856_10013601 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV205

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3474
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3474

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (92.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F052260	Metagenome / Metatranscriptome	143	N
F053978	Metagenome	140	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066856_1001360110	F004493	AGAAGG	MQTNVTKNIELGFTDNQWGQLIESNGLLIMWFLEWNQVNDAVNKDREKPIQIQDFFAQKYNQSAGCDPWHMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPTKSGGHHVVRMD*
Ga0066856_1001360113	F052260	AGGAGG	MFVILATKPLNDGTKGFRFNFLGKKGIVRRRKLKSNGIKFTKGDCMNAYHIGKTTVYTEQSVNKTTARKFCHLAG*
Ga0066856_100136012	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYMGSDKQKKGRC*
Ga0066856_100136013	F103094	GGA	MTKKTPEKLNIEMSISSEHSCYVSVKGYTIYVEVSQATNNKPYISFWKKGWEDDRAITVSH*
Ga0066856_100136014	F005813	AGGAG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGKPNKEAMSWFRWAHDCMLRGQYEDAKEMLRKGLIDDKENT*
Ga0066856_100136016	F053978	AGGAG	MHINETTKQMIREIVVELFKEVASKQTFGVNDEVIQLDEHLHDWTGRKIDKYKVKVYGATLEERY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066856_10013601

Overview

Ecosystem & Geography

Associated Families

Sequences