NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068884_1491658

Scaffold Ga0068884_1491658


Overview

Basic Information
Taxon OID3300005417 Open in IMG/M
Scaffold IDGa0068884_1491658 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)732
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Longamoebia → Centramoebida → Acanthamoebidae → Acanthamoeba → Acanthamoeba castellanii → Acanthamoeba castellanii str. Neff(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005592Metagenome / Metatranscriptome395Y

Sequences

Protein IDFamilyRBSSequence
Ga0068884_14916581F005592N/AKETQHNMGAGSVKGLVLMETIFPSGDNSTVFDDPKMRQKLMAEIKKGKIKPQTASDEIDVDEDQDSKIDAQAQEIWSYYDPKGLGTINKKQVQQFFKDCFTLHCLRKHQKEKEALGMGVTMKVALENATKMLDPTGVGNVSKQTFIDFLNEVDLVELLGPFTGQTGPRSIPSRLPQNMMFDPSTLPKDAGGKVNLGEVKYRDYNQTLE*
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