NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066859_10012522

Scaffold Ga0066859_10012522


Overview

Basic Information
Taxon OID3300005425 Open in IMG/M
Scaffold IDGa0066859_10012522 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV199
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2580
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027539Metagenome194Y
F033048Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0066859_100125224F027539GGAMNLTWFYFHCVLALVVLYKDYNGTLEESLNKFESKIGLYTYVDTSHREEEAPFYIPPIEEEIDSTFILPDYEGIDVPIDSTMDRGENE*
Ga0066859_100125225F033048AGGAGMFDKTIKLTGEYPSDFKPTMSVMEIQQYFDAYSFHDGRMIGGSKVDYHGEHPDDLIVFNANVLMPGYGKVWYGDLNLTE

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