Scaffold Ga0066849_10007522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066849_10007522

Scaffold Ga0066849_10007522

Overview

Basic Information
Taxon OID	3300005430 Open in IMG/M
Scaffold ID	Ga0066849_10007522 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4423
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009558	Metagenome	316	Y
F020795	Metagenome / Metatranscriptome	222	Y
F023718	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066849_1000752211	F009558	N/A	MYRKSWEARHYWVNEFGIIEHDIFAHIPPQHYVVKWKEGFERKEKHFDNKKKARAFFRTVRKTATDFIRIVKWH*
Ga0066849_1000752213	F020795	GGA	MRTATLEKLNEGELIFGSPTAGKWFVREYEDDVEMSGSFFDTEERAKAHIETLNEK*
Ga0066849_1000752214	F023718	AGGA	MKEKIDLSLNRSLEELIASYWEAEGEALESNEFSALENYLQGMDAL*

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