Basic Information | |
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Taxon OID | 3300005430 Open in IMG/M |
Scaffold ID | Ga0066849_10011276 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3635 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000379 | Metagenome / Metatranscriptome | 1211 | Y |
F003357 | Metagenome / Metatranscriptome | 492 | N |
F032033 | Metagenome | 181 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066849_100112761 | F003357 | N/A | NMTRNSWIVKQVYTDAKENLGWLFKIILLAGGFIAGIKLLMFFNVPKEILFPVMWIAFILVAIYKWYSMKYDWKKDDKAYDRASKRYMKKLKGDK* |
Ga0066849_100112763 | F032033 | AGGAG | MENIWEKDYGPFRVFGYVDHEDIDVSELFDEEAGYHIDRMREDINQGKKVWAIATAKVYCKGVELGSANIGGLLFDDYEELKKEVFEIDNHDIVHEALKEARASLNYLKDVKAPPREQLTSQFMEGQIW* |
Ga0066849_100112769 | F000379 | GGAG | MQKIDYTNKHGIMVGYIDRSDNVVAVETSWKSSYSAMAQILLNKYPTKEDAIKAVDSPALVPSFRKEDYQYVDGFGDVIESNLSWHKDNMRKNVGHLFLFMKGTWQYSDNGIDWEPAKEIIE* |
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