NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066845_10000011

Scaffold Ga0066845_10000011


Overview

Basic Information
Taxon OID3300005432 Open in IMG/M
Scaffold IDGa0066845_10000011 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59762
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (62.20%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000499Metagenome / Metatranscriptome1074Y
F005612Metagenome395Y
F069474Metagenome / Metatranscriptome124N
F093999Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066845_1000001141F000499AGAAGMQKEIYKEDYFGTLMCVLVDESRKILPTFNPTKELHKIQNDMCKAGSWIDSMPVGTIVESVPQKSIQKLQADVLPEYRRLAANLIDKFIDEFEAQGGRRIEITEIFERMYKWKK*
Ga0066845_1000001145F093999N/AMRKHHNKLYYGLFKHKTVLRVPGSLMFYPTTNEHLLQVKKNYPDAPDMHFLADFIMNNRKKIKFRFQGKKAIFYSDQNLAQQLIERFWEYWIGSESVDPKLNDLQPNTIGCTRLPHGKYHYQIHLKKDAQLYINDTQRENLRYFIERNIDHCYIPGYAVMDYLENRCPYCFGGYFYVTQERFITPIYMMAQEAIDKVIKFRKVKNAGNKKTTR*
Ga0066845_1000001147F005612AGGMGNGKQKIKRPKETKAWKILNGTYAKQTQTQKDVERLIAAIQQELEWDDKDIATHLKIQKGLIDWSGNVRSKRKPRKHIRKCS*
Ga0066845_1000001181F069474N/AMFVETLKTLKLYKRESKLGICHTVRRNNIIYVLKCDTCGTTFKKPKSKVDPERVEKGHKHFCDRCDL*
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