NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070714_100063051

Scaffold Ga0070714_100063051


Overview

Basic Information
Taxon OID3300005435 Open in IMG/M
Scaffold IDGa0070714_100063051 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3186
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016890Metagenome / Metatranscriptome244Y
F030272Metagenome / Metatranscriptome186Y
F079284Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0070714_1000630512F079284GGAGMKWTGEYIIDDAGQCRWHEGLRIHDEQMKSAYRKNSLIEFIIETSAVMGVKVGIA*
Ga0070714_1000630513F030272GGAGMNKKAASLAILALLCVTTLFVFSQTSSQFPEMDKNGKPVLPRPMPHLVYSPADLAHGGVTLPASIGGATPNTSIIRLGDATKMTVFASCTQNFDLVMNVYTADDQGQSSPNFTFYNSYIIATNMTSGAQQAFLATELAPTVTTGTLGAPVRLPQLAVSFFEKNQVAVAGTCTDRVIVGY*
Ga0070714_1000630516F016890N/AMARETYKQAYATAKVDLLEQLQKRDALDQKIRKLKQTVKALGELCGADPEEIDKLLLVEGFAIDAKPGFTDAIRRLFRIHQTALSPVDVREDLVKMGIGVGQVNLLSSIHTVLRRMAEAGEIE
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