Scaffold Ga0070708_100000071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070708_100000071

Scaffold Ga0070708_100000071

Overview

Basic Information
Taxon OID	3300005445 Open in IMG/M
Scaffold ID	Ga0070708_100000071 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	67454
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (57.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022182	Metagenome	215	Y
F039771	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_10000007122	F039771	GAG	MSSTPSPPPDRDPLQNLLEDAENELRRRLEEACEADASGLSTESTEEIRQLEDNLLAAAMAAKQTIAVRRHMKRRGHAEREQPIKVDLAERDARADTLEKGESESEAGATMGVREFVDASGQRWRAWLVVPGQSKANASGRRFLGDFQNGWICFEGLGNSARRRLPFRQASWANVSDDELRDLVQHAIDAPIRVRKQQEKR*
Ga0070708_10000007153	F022182	N/A	MIGVVVVRDSHEGPPMQLRYWLTRGALVGLVVLGIGGRLLMRVVAHMEHRPVFVFTIEGTLTVVLAGALSGLLAGFIYYLVRRFIRKRWLRTATFVAICELVVWRGVHALLPVPQLMFMTLALIYLAIIDTMGRRVHS*

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