NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070708_100481365

Scaffold Ga0070708_100481365


Overview

Basic Information
Taxon OID3300005445 Open in IMG/M
Scaffold IDGa0070708_100481365 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035865Metagenome171Y
F092610Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0070708_1004813651F092610GGAGGVVDLGSLRAARRAEQPAVRPLGIPGRLRSLFSAPGWTKKPEPRVRYGQSFLPGLAVLGRQHVGEARSLLERAEAVRGRRFTYLGRTVGFPGRIDWKPAGLSEVWLLGLNSLDDVLALGVAAALASSPEARRRWYDVAAALVREWIAGAEPGGAAWKLPALARRVPNLLYVQALFAPELRADPAQRRALLESLYVQAATLGAA
Ga0070708_1004813652F035865GGAGGMVRDGGDGWRPWQLIPRLAAGAISVPVVVGFVALGAAVILARSLREMARETWARMPSRRGNVRAGRGSNHNVAA*
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