NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066686_10068992

Scaffold Ga0066686_10068992


Overview

Basic Information
Taxon OID3300005446 Open in IMG/M
Scaffold IDGa0066686_10068992 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2209
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055584Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0066686_100689922F055584GGAGGMDREVVRRVLIEGVFVVLAGFSMGTLVSIASFADYGLLLSLDVGGTIIFVALAAGIAIGLRLRDAEPQYLVLAGFVASSIAIVIVLISVYAPVFAGVVPGLEALGPSDSARAVIIFASLFLIPLHLVGCVAGYALADFLAPEGLRRGRNLERL*

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