NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066689_10301649

Scaffold Ga0066689_10301649


Overview

Basic Information
Taxon OID3300005447 Open in IMG/M
Scaffold IDGa0066689_10301649 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001681Metagenome / Metatranscriptome652Y
F001901Metagenome / Metatranscriptome620Y

Sequences

Protein IDFamilyRBSSequence
Ga0066689_103016492F001901GGAGGMTRRKQPWGQRRGWIVPSDGSPPRELPQQMVGSKLISWLGTMPEMQPTKLEQNVASKDYYHRYVLNPEGVSVYVPEGRDAESLSEPIKIEIRRQLKGQS*
Ga0066689_103016493F001681N/AKTLRLQRDPDGFFLWHPDYAPWIVGRHSLAANPNDRAFFDPNTGEIVWSSRDGMKDYEMDQLAARHLAGELEEMPQCKSEREVETWFLERGFKVEWI*

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