NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066689_10303626

Scaffold Ga0066689_10303626


Overview

Basic Information
Taxon OID3300005447 Open in IMG/M
Scaffold IDGa0066689_10303626 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)990
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F015771Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0066689_103036261F000703GAGGMCRSCSRCFSVSDRGALAQRAKNLWPEGLSYSNKYNHKEMRVREYQDSDLAELRAIHAAQGFDYPLPDLRNPLFVTKLVLSGENVAPPFRAASVPLNEEPASGDAALKPGDTKERVLGAAFLRLTAEAYLLLDPRAGAPHERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGNRIARLGWLRDDAWTPYCK
Ga0066689_103036262F015771N/ADPSDARPGLFYFAESDTTPAFGAPRVYFMGASRNLYVQLGNQTLYWRAYSQYIGSLPSAPVSFGAPPIAVAGGGITGPAPQPSSGSGVFPNGVPRGGNGFGIHPGSRIARQTVL*
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