NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066682_10277977

Scaffold Ga0066682_10277977


Overview

Basic Information
Taxon OID3300005450 Open in IMG/M
Scaffold IDGa0066682_10277977 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1080
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014522Metagenome / Metatranscriptome262Y
F076408Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0066682_102779771F014522N/AVRKILITLAILVGSIAAVSAIWIFGGRQLSLFIDRYRTIETASARINSITYEGTGTG
Ga0066682_102779772F076408N/ASINSRYAEVVKGFRRCEPFEAFVQGVTQSLRVRYSLLIELADAFDAELIACPFTGETIAHGVVPEFLRAIGIDPSQFLDTNVRRNQGAGPFTVAVARDASRLMGGPGKQLKWLQAKQCKTKLAAYLEENGLADAGYCGLTTALARQIEREFRPDNDAFAQRVWGRPWAEIFAADIYQEFTPNDFEMCRPDESTERQLERAIREMTAIVEEILLDPVLAVEAPWNDLLRRAGWTPRA*
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