NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066681_10126302

Scaffold Ga0066681_10126302


Overview

Basic Information
Taxon OID3300005451 Open in IMG/M
Scaffold IDGa0066681_10126302 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1486
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007214Metagenome / Metatranscriptome355Y

Sequences

Protein IDFamilyRBSSequence
Ga0066681_101263022F007214AGGAGMNGIYLARLPLSAKVFCTLFLVGIGCGAVAAFVQAATAVGLSPSDVEASLAPDMPMTHLGHDQMSAEREIALGEVSRAARVWIRTPLLIQTSHTHLFGQTLIAGLLGLIFLFASVREWLKALIVALPFVGTLMDIGGMWLTRFAWPGLAGLVITGGSLFALGYALIALVSLWQLWSRTEARA*
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