NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068706_1012087

Scaffold Ga0068706_1012087


Overview

Basic Information
Taxon OID3300005452 Open in IMG/M
Scaffold IDGa0068706_1012087 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2183
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.963Long. (o)-110.715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007172Metagenome / Metatranscriptome356Y
F012676Metagenome / Metatranscriptome278Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0068706_10120873F054900AGGAMISRGCANIGAMEYERAVVQLLVYGVTLIMLYVVDRWSRG*
Ga0068706_10120875F007172AGGAGGMNTPERRTFAAALRAAKRDTYCRQVGGFVIARMTDGTIDWFPLGQPPHRGGEPDKGAVILGRWRWNYRRWSRIG*
Ga0068706_10120876F012676AGGAGGMSTTIKIAAGWDGNPKSLTSPEHNWIRFLEAQGIAYPAYLDEPAGWRLVVCDERRLTRALHALRKYGVYGICEWTYDIH*
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