NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070663_100477281

Scaffold Ga0070663_100477281


Overview

Basic Information
Taxon OID3300005455 Open in IMG/M
Scaffold IDGa0070663_100477281 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1032
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002603Metagenome / Metatranscriptome544Y
F063987Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0070663_1004772812F002603GGAGGMTAILVRFPNESVKLDCVEKRRVLTTLAVIYEGGSLHGKTADFPTRDLERLVVGVHRRTSHFFETYKRTICIDIRSRRTIFRCAGRTAERNNSSWWERLLAKHRICKLKAIEI*
Ga0070663_1004772813F063987GAGGMKFVSLTKSTAVPHQILGTSTNEKRELLMCGHSLIARLTIAIFLFQTPGVTSGVHAEKPDSTVETSGVGKRKLVIGPSSTSVALGKASLIVSPLTHRDGSYVGDYQLKVK
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