NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073908_1012466

Scaffold Ga0073908_1012466


Overview

Basic Information
Taxon OID3300005460 Open in IMG/M
Scaffold IDGa0073908_1012466 Open in IMG/M
Source Dataset NameMouse cecum microbial communities from Vienna, Austria - Mucus amended microcosms incubated with D2O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4374
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Cecum → Mouse Cecum → Mouse Cecum Microbial Communities From Vienna, Austria

Source Dataset Sampling Location
Location NameAustria: Vienna
CoordinatesLat. (o)48.2Long. (o)16.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0073908_10124665F013656AGGALEKRYKEPNKLELETTINVLYEENVISIYTNKPNLQKQLCKSIGEPEKEFKKGKSILASRWCIPMSEKSKISKMMLKANIFEL*
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