Scaffold Ga0070706_100288140

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070706_100288140

Scaffold Ga0070706_100288140

Overview

Basic Information
Taxon OID	3300005467 Open in IMG/M
Scaffold ID	Ga0070706_100288140 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1532
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001175	Metagenome / Metatranscriptome	756	Y
F018903	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_1002881403	F001175	GGAG	MRAVIAALACVVAACGPSNPCSGHQFDRLRRYSLPYAGHWVVVRGDTLTFPDAPPMSDRFRLGDISLDTTTIVVDRDCIFRGQIVFRAPRAETLAVSWFGQPEQAIVSGWPADLGPFAGLSLAPSGRDSMSGTILIDSKLGVQARPGMTARFVAGRAHRLSSHP*
Ga0070706_1002881404	F018903	N/A	LQVYAGSLKLPAMKSILWVVPICLIAACGSSDKSSQTVNRDTLTERQKDSILAGSKIPGARAVGRAMTAADSMSARVHQSDTVARDTTEF*

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