NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100232712

Scaffold Ga0070707_100232712


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100232712 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1793
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019740Metagenome228Y
F031442Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_1002327121F031442N/AMAVPSLDTEHPGIRVIAEVASVLQAGLASGEALHGVVSALRRGLNLRRCRVWLRTPDGTRFAPVTTSGDDVDVPGYLPPVAEWVQHGAQREGVPGGTVMRLPLIHDDEPLGALEVVIPTGRYEGIAHDVVVVVARILA
Ga0070707_1002327123F019740GGAVRRAVGRLRFELDDRRRWSLWYYGDGAPVPLIRDAEVVTWLADRALGLADLEDSTVGTRRPPGGDAVVVRGRAAGVWVEAEFLTAGAAEAPQAVVTVTVFPDRFLPSVKGIRFFQLPESGVLGGPGPLVALVNGYHSSDPCRVVAVGAPEAAGVASHGALGLARAGRGLAIAFDAGEPGEARVRLGPGGLEAASEWLPTRPLRPEGDASRMRVAFDPQGDGLTALSASFIPSSPVDQDRL
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