NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070698_100001283

Scaffold Ga0070698_100001283


Overview

Basic Information
Taxon OID3300005471 Open in IMG/M
Scaffold IDGa0070698_100001283 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28015
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000621Metagenome981Y
F027650Metagenome194Y
F060318Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0070698_10000128321F060318AGGMKHDSISPDEKAAALLRVASYLGRPQQFMAVADAPAEMRRTLELAAKGSVVLTTHGEPAAAVVPFATLEDMRRALLNLLVAEIEATFTRSQERLKSRSGEVPLSSEEGMEGLVGEALRRARRPRRRSGRKVSRG*
Ga0070698_10000128324F027650GAGGMMEKLTVDAEGRIIIPSEVIQKRGLRPGDELTLVESAEGLLVYQGGVDVKTSAWWNRLDERQRLLAQDDALRYENLSEHERNVIWNQEAESIEIEAESDDLDLPTN*
Ga0070698_10000128332F000621GAGGMPTTKHELLDWLMDVPEEAEIGTDGEGLALLAILGTNVHLLEVGHIPNADELYAEAINQAMLERLRRIDAAGGETDTGVIIVTFQGYVSGVPNLFSSDFNTAFVFKNKEQAEAFITEFADELHNPQILDCP*
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