NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068912_11133153

Scaffold Ga0068912_11133153


Overview

Basic Information
Taxon OID3300005506 Open in IMG/M
Scaffold IDGa0068912_11133153 Open in IMG/M
Source Dataset NameSoil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameUSA: Colorado Plateau
CoordinatesLat. (o)38.42Long. (o)-109.4099Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066357Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0068912_111331531F066357N/ALKKWMMLAAILALVLVAAAPVVAQVAFEIGDTENESGGIGTSNEFEIAGNNNSACLGQQQFGQTGNFTNQQGALQYASGVDDLEFGGGELSFAPESETACEQAVQQSSAASSFAP*
Ga0068912_111331532F066357AGGAGGLKKWMMLAAMLALVLVAAAPVVAQVGFGIGDTENESGEIETENAFGISGDNNSACLGQQQFGNTGNFTNQQGALQYASDVDDLEFGGGELSFAPESETACEQ
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