Scaffold Ga0066825_10006689

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066825_10006689

Scaffold Ga0066825_10006689

Overview

Basic Information
Taxon OID	3300005510 Open in IMG/M
Scaffold ID	Ga0066825_10006689 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3781
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044142	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066825_100066895	F044142	N/A	MEDILLDFNRIQVLTPEETENVFNELISMRKLWLARTNWHPAFEIAGEDNDIESYMHYYTLGATLYMDARDKGWKFYTKLYKMYNRVLWKRLGWLYDKFLVEIQKEIGEAEYTEGLGLPGFHIYEFDDATSDMKHHRCLHYDGQWWYARKFFKEKFKEIDFRNQLSYTFSIKLPHSGAGIAMWNLPQEFNDKANALKNGEDIIKRYENVEYVKEIKQLKNLEDPWKYDEFFYGDGDLDPFIPHVIPHLEGHSFWYSGMIMHQMILGDKFKKGDYRITFQGHGLKCDGKWRLWW*

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