Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1002371 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1002371 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	17134
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (96.88%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

17134

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (96.88%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022786	Metagenome / Metatranscriptome	213	Y
F034398	Metagenome / Metatranscriptome	175	N
F040080	Metagenome	162	Y
F042639	Metagenome	158	Y
F052272	Metagenome / Metatranscriptome	143	Y
F063185	Metagenome	130	Y
F073281	Metagenome / Metatranscriptome	120	Y
F096247	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100237112	F063185	GGAG	VEYKSEYMADYYADNEPHEFVVTQERTILVQYTVEASSLSNAVAQIEEGDYSGVIDEDASHAVTDKTGRIVSARVNDDD*
Ga0074648_10023712	F052272	GGAG	MKTETTLNFTAEQLNELKRIVDTVGWSTRNEETGHIDAYVSEQRVKFAKDLAGILGRMDTAAIVGTSEGI*
Ga0074648_100237123	F042639	AGG	MKPADIKKVIELQGKILKLKDRIMKDVERHNKMVIDELRPALEGVQHGTIYQVGDMTYKRGRLFCQLECDDYGLGIKADGLATLRRIIVEDKNAPSDDTESGPSASVSE*
Ga0074648_100237126	F022786	GGAG	MTDLTIDEEKIAALEQAGLLKGRYYIVLEPLEDEDGDEDGFAIRAYATRDTQVEVDGEKTFDPTYVILQGLLGAVYENFDDLYDMGLERVTLEALGEVVPEEELKPEHRERIKSMEGNVITAKFGELQ*
Ga0074648_100237129	F096247	GGAGG	MSGLEPDNKCSICHCEFDMESEGGIQGYIGIIPFSLCPMCFSGMMDMYEQLSGDLEVEDDDDDASRR*
Ga0074648_10023713	F040080	AGGA	MKTFETFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAVDDIKPANKNRIQAQHFRFLALLNEYGEMPRKHVAKLLGLKESSVDQLATQIRKHHLGDLKSRKGVYTLHALGDDVSTNGNFKLV*
Ga0074648_10023716	F073281	GGAG	MRPKTICHPEALADWRANDERTYTFSGETNYANNDKHPLPKEQTKLEGLLARRLKEAIERENRKRGAVCKEGQA*
Ga0074648_10023719	F034398	GAGG	MIAEQYRNIKPHFAGGRISPLAFRFRCILLDQDTENPPFEPARYFVVNVFAETRDQVIDCLGEEYPWCDIMVADRAIGLNSDDEFLESWLEYYDNTEQQPLREAPHGKANS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1002371

Overview

Ecosystem & Geography

Associated Families

Sequences