Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1002638 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1002638 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	15948
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (61.90%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

15948

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (61.90%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023961	Metagenome / Metatranscriptome	208	Y
F037431	Metagenome / Metatranscriptome	168	Y
F094092	Metagenome	106	N
F101484	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100263812	F094092	AGGAG	MLKPLDSHKPATSSTFLPHERPEVLRKLKEIEFNESDRLSDNYKDLDWFGFEAISIYERDDNIIGFSSIIHRPEYFAQKECRILNRYYESAEMRRTSKIIGDDHVCEMVMQQLDIAKKIGFEKAFISRCRSPRHLKKFMENVSTRTGTEWHMEDEKIAVCNPEFNECWQYKVWTELC*
Ga0074648_100263817	F101484	GGAG	MTELKKLMKFRENIHHFKADDPGRDKIDQILRDAHELVPHKNNLWAYNIDVYGPEHTKEKETVAMQTVSGYDKRNFAPGGKDHGNIDKLREIYHKWKAGRETLRDDPSIANRKIRAKYQGYSFNEQVTAPYLLVYYQVPGFPTEKQLSKNYKRLMIDYKDNEQWMIAASMHGYGTTLLAAEQGLHASFCKCYYHDIENFTNILSPLRHGFKNVAFLLGIGYRDGELPYYKNPNVPDYDEIVTWK*
Ga0074648_10026386	F037431	AGGA	MPTYKTDRPFSETQLKAMDIIHDPDTKLFEEQKGESYTVDEFINDRECDRLRTYFEDNFDRIGYNINHHVLHITYPMLIPEISDIVRPKVLEHFGDDVVFYSDVAQSDPISVGDQFFKSIKPYGLHTDAVTHLNGYRPYKDIIIPVELDSIPVSEYVTFNQRYRGRATHFMRGRQIGSFANYANVIRHQSYDEYGVENLEHNERDQQILKDIMPAHIPMSIYEGLSIEKILPWRPRCAIIHDASVLHAPADYRKHGCGYKIGLTLHLMKRDPHYNNRLEGYYTPFSRYTKPLIPA*
Ga0074648_10026388	F023961	GGA	MPNYIETDYKVNRTLLKSYMKDYWEDSNELYKEYMSWKNNKFFVQVIKEFDRPLLREIKNIWNYLGIRPREWRCNFFRVLPGGELPLHVDVLSKCSVVIPMTEMTGNLYFEDGTEVLYQNMTVINTKVAHGVKAPTKERIVFHMGIHDTPYEEIKLGHDT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1002638

Overview

Ecosystem & Geography

Associated Families

Sequences