NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1003602

Scaffold Ga0074648_1003602


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1003602 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)12941
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (47.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010653Metagenome / Metatranscriptome301Y
F011890Metagenome286Y
F017421Metagenome / Metatranscriptome241Y
F043151Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0074648_100360218F043151AGGAMIPYTDEEQNWVSTGSYRKSNLNRERRARREPDLRKHDWAIRTTIEVDGKTYVVPVQV*
Ga0074648_100360219F010653N/AMLLRTALLYMIMTVSAVAFHDNTFAVFDLKEQLQWLQINLWELLHQLEYVEPHQRGIVYEEIQHIRSEIQRVVDLLVTHDQAQHPQP*
Ga0074648_10036024F011890AGGAGMKKLRLALLFLILATSARAETQESITLINSGKAGGSFNARTLMYKEGLIAAGYSVKFENIGKISQAVKMFKESNEPTIMVYANNQVYNQDLFHTNDNFIMAEYKQPLYVCRTNHSKDKKGKLTVAHGKGYDPRLLTALLGDGVTLVPYKNSSAMLKGILGGDVDMMVNNQDNSFKYIESGHGTCEASDVLPVMVATVIGNNIDVQAIREVIFDITMDIKFIEYHRSRKLVRPTGTWKDELILTQELEKGYEVK*
Ga0074648_10036026F017421N/AMYTLEKRKMIYIMTRKPVWYHTHCLTPWKGSPLWYDPNWVIGDCELCRMDVQGQDWWNGCTYKNSQKRIFDTLDLTKKYWF*
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