Scaffold Ga0074648

Basic Information
Taxon OID	3300005512 Open in IMG/M
Scaffold ID	Ga0074648_1003942 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300005512 Open in IMG/M

Scaffold ID

Ga0074648_1003942 Open in IMG/M

Source Dataset Name

Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	12208
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (33.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12208

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (33.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Greece: Etoliko Lagoon
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Greece: Etoliko Lagoon

Coordinates

Lat. (^o)

38.4825

Long. (^o)

21.315

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011840	Metagenome	286	N
F019926	Metagenome	227	N
F026163	Metagenome	199	Y
F035121	Metagenome	173	N
F037989	Metagenome	167	N
F042082	Metagenome	159	N
F049591	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100394210	F049591	N/A	MEVPVILVLPIALIMLICYLAYLKICDEIREFKKLEDEVERQANEAEKPYVEPLYRRRFKK*
Ga0074648_100394213	F019926	AGGAGG	MITILVEDKDIVVEQYFVTLIFDREEIESMIMEHYRDEYSDHVFRVVDEEGASFTTDFILYNDIERHDVINDLMYYHDLKPTKIKLVENENK*
Ga0074648_100394218	F042082	N/A	MKIEVNYIFRENMIDPIYEQIGLESDAEEVEIIEQGILDLSKVIGASQFYEMTQVFCEGSHSFYIDLPYEEFRYIWLTV*
Ga0074648_100394220	F026163	N/A	MQLIKRLIPFAISTLIALAALQPQRASCQYSDSTIREINERLIELHQCREKQALYIQLAHNDSISLHNQAAIITNQEKTIAKEKSKNKILRNVNAVQFALLILALIL*
Ga0074648_100394225	F037989	GGA	MKGLAIIGILAIILALSTDTPTIEDEVAEQIEQSQKMHDSAMIELKRLHDINDSLLDKHFGK*
Ga0074648_100394226	F035121	N/A	MRLSFEQFRKEPQKALMYAMIFAMTALYIRAERQSYVATAQCEKRLVKCEMQLAKMSAMLKTQDSLCSALVTEIKIYKELGKI*
Ga0074648_10039426	F011840	GGA	MNYIQDIPQEMILERLKKLCSLGGIKPPQQGKEFIEFIQDGFARCEIETMDKAFREYLLGKYTIRQPQQLNVKFVSDIMNAYIKDNSHTIKLKPREYMAIEAPVDNSPKMSAFEIAKRNWENVRTKRAAVFPSLLSNAWDELTEKPKIDEKRVGQLVEMIHDNQNIWFYKMKRERGHKQKRSQLDEEIIYKAACMAYYLEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0074648_1003942

Overview

Ecosystem & Geography

Associated Families

Sequences