NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074648_1006120

Scaffold Ga0074648_1006120


Overview

Basic Information
Taxon OID3300005512 Open in IMG/M
Scaffold IDGa0074648_1006120 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9026
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameGreece: Etoliko Lagoon
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0074648_100612010F023856AGGAGMRCRACNRILEETELTKKDTHGDFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY*
Ga0074648_100612012F002858AGGAGMAIDEKSIYLVDGGDYQVYCFGYTQARTVTNDIMKRDPWGGIPFVYQQDQLEVSFDDKGNVVMPRVVLDRILFLASDELPEGEG*
Ga0074648_100612013F073499GAGGMTTEQELEQWIRDNPWKANVIYPAGGIGFMMFIMYTCMQIIDSFLTGTIV*
Ga0074648_10061204F008883GAGGMNIGRYTIWYNHEDHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWTFMRFMRRLRHV*
Ga0074648_10061209F024320GGAGGMTFEEYERGYYGEDSGDSSEPPEDPETHAMLEHLVEFETEMYRLKCRRRLKICTRRQLERLLIELHGEEWRDAL*
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