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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005512 Open in IMG/M |
| Scaffold ID | Ga0074648_1006387 Open in IMG/M |
| Source Dataset Name | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8761 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (21.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Greece: Etoliko Lagoon | |||||||
| Coordinates | Lat. (o) | 38.4825 | Long. (o) | 21.315 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014008 | Metagenome | 266 | N |
| F016624 | Metagenome / Metatranscriptome | 246 | N |
| F037709 | Metagenome / Metatranscriptome | 167 | N |
| F077240 | Metagenome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0074648_100638712 | F014008 | N/A | MVRFTKINNTEVPVSFGNATLIRFEEETGISILQLGQETLNYKNTLKLIYEALRDGHRKEGKSFEWSFEQMCDEFDEDMAAINRVMELFSNSMPAAEKKTKTSRTKAHLTHTK* |
| Ga0074648_10063874 | F016624 | N/A | MNKLMLFGGAVVLTASLIFAAARNSEFDAGYEIYRTTASDTITDTEADTITISPLLYSFWKYNHTVKGVQESGTIDLTLSVQESNALSGDEWYTIATDSVDADGEITDMYGDNYGVRQRIIITGDGTQSAIYTHRITLKKPY* |
| Ga0074648_10063875 | F037709 | N/A | MADLIKIKFIKSPTGKYRMAYNAGHSGLVPKDLGEKLIKDGFAVLVESQKVEAKTSIEAESATTTARKRSTRKTK* |
| Ga0074648_10063878 | F077240 | AGTAG | MVHLSQADLISFNKDVELLIRKVDDVKEIRKILNPAAIVVREKARQLTPIANQRNRDNTIERKFAPKKLKSNVLYTYNTPKLNGKKRAGKGYGRVSGKYGIGNLRYSIQIISEVKTKIKGPIAIVGNLLNRKKNIPNPNEKKNNGWYAHIIYGSARAFGDKVTGAALRQTQGIVYALIQRGVEKRLKNIANGKIQ* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |